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Description : component *(uS10) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0001666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001666_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.4G023300.1 | |
| Cluster | HCAA Clusters: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 115495 | No alias | Ribosomal protein S10p/S20e family protein | 0.09 | Orthogroups_2024-Update | |
| A4A49_09412 | No alias | 40s ribosomal protein s20-2 | 0.04 | Orthogroups_2024-Update | |
| At3g47370 | No alias | 40S ribosomal protein S20-2... | 0.06 | Orthogroups_2024-Update | |
| Bradi1g51650 | No alias | Ribosomal protein S10p/S20e family protein | 0.12 | Orthogroups_2024-Update | |
| Brara.B01551.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Brara.C01470.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Brara.I00689.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Brara.J00726.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
| Cre16.g660150 | No alias | Ribosomal protein S10p/S20e family protein | 0.07 | Orthogroups_2024-Update | |
| Glyma.03G142200 | No alias | Ribosomal protein S10p/S20e family protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.11G002400 | No alias | Ribosomal protein S10p/S20e family protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.19G145000 | No alias | Ribosomal protein S10p/S20e family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G145100 | No alias | Ribosomal protein S10p/S20e family protein | 0.03 | Orthogroups_2024-Update | |
| HORVU7Hr1G028050.5 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
| Kfl00331_0150 | kfl00331_0150_v1.1 | (at5g62300 : 189.0) Ribosomal protein S10p/S20e family... | 0.03 | Orthogroups_2024-Update | |
| Mp2g09440.1 | No alias | component RPS20 of SSU proteome | 0.04 | Orthogroups_2024-Update | |
| PSME_00047252-RA | No alias | (at3g47370 : 204.0) Ribosomal protein S10p/S20e family... | 0.03 | Orthogroups_2024-Update | |
| Potri.012G128300 | No alias | Ribosomal protein S10p/S20e family protein | 0.06 | Orthogroups_2024-Update | |
| Potri.015G129800 | No alias | Ribosomal protein S10p/S20e family protein | 0.05 | Orthogroups_2024-Update | |
| Pp1s257_105V6 | No alias | 40s ribosomal protein | 0.07 | Orthogroups_2024-Update | |
| Pp1s271_9V6 | No alias | 40s ribosomal protein | 0.06 | Orthogroups_2024-Update | |
| Seita.9G468800.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Sobic.001G436200.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Sobic.010G023900.1 | No alias | component *(uS10) of small ribosomal-subunit (SSU) proteome | 0.19 | Orthogroups_2024-Update | |
| Solyc01g096580 | No alias | ribosomal protein S10p/S20e family protein | 0.13 | Orthogroups_2024-Update | |
| Solyc01g096590 | No alias | ribosomal protein S10p/S20e family protein | 0.1 | Orthogroups_2024-Update | |
| Sopen00g005650 | No alias | Ribosomal protein S10p/S20e | 0.04 | Orthogroups_2024-Update | |
| Sopen00g005660 | No alias | Ribosomal protein S10p/S20e | 0.1 | Orthogroups_2024-Update | |
| Sopen01g040310 | No alias | Ribosomal protein S10p/S20e | 0.04 | Orthogroups_2024-Update | |
| Sopen01g040320 | No alias | Ribosomal protein S10p/S20e | 0.13 | Orthogroups_2024-Update | |
| evm.model.contig_560.7 | No alias | (at3g47370 : 151.0) Ribosomal protein S10p/S20e family... | 0.11 | Orthogroups_2024-Update | |
| evm.model.tig00000842.28 | No alias | (p35686|rs20_orysa : 147.0) 40S ribosomal protein S20 -... | 0.07 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR027486 | Ribosomal_S10_dom | 31 | 125 |
| No external refs found! |