1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.4G028500.1

Seita.4G028500.1


Description : beta-type-1 component *(PBA) of 26S proteasome


Gene families : OG_42_0003705 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003705_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G028500.1
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
At4g31300 No alias Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F4JRY2] 0.06 Orthogroups_2024-Update
Cre06.g279000 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.08 Orthogroups_2024-Update
HORVU7Hr1G018660.1 No alias beta-type-1 component *(PBA) of 26S proteasome 0.03 Orthogroups_2024-Update
LOC_Os02g53060 No alias peptidase, T1 family, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g04800 No alias peptidase, T1 family, putative, expressed 0.05 Orthogroups_2024-Update
Mp6g09980.1 No alias component beta type-1 of 26S proteasome 0.04 Orthogroups_2024-Update
Potri.006G077900 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.05 Orthogroups_2024-Update
Potri.018G145900 No alias N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.03 Orthogroups_2024-Update
Sopen07g005910 No alias Proteasome subunit 0.06 Orthogroups_2024-Update
evm.model.contig_4442.11 No alias (at4g31300 : 219.0) Encodes 20S proteasome subunit PBA1... 0.07 Orthogroups_2024-Update
evm.model.tig00001098.5 No alias (at4g31300 : 209.0) Encodes 20S proteasome subunit PBA1... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005839 proteasome core complex IEA 16Dec
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 23 203
No external refs found!