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  5. Solyc03g111090

Solyc03g111090


Description : Transcription factor GTE10 (AHRD V3.3 *** W9SF96_9ROSA)


Gene families : OG_42_0000275 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000275_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g111090
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
Bradi3g14160 No alias bromodomain and extraterminal domain protein 9 0.02 Orthogroups_2024-Update
Cre08.g367300 No alias DNA-binding bromodomain-containing protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G045030.1 No alias transcriptional co-activator *(BET/GTE) 0.02 Orthogroups_2024-Update
HORVU6Hr1G045070.3 No alias transcriptional co-activator *(BET/GTE) 0.02 Orthogroups_2024-Update
PSME_00001621-RA No alias (at5g63320 : 290.0) Encodes NPX1 (Nuclear Protein X1), a... 0.03 Orthogroups_2024-Update
Potri.012G094300 No alias nuclear protein X1 0.02 Orthogroups_2024-Update
Seita.8G053600.1 No alias transcriptional co-activator *(BET/GTE) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR001487 Bromodomain 214 298
IPR027353 NET_dom 365 427
No external refs found!