1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.4G044900.1

Seita.4G044900.1


Description : cyclic nucleotide-gated cation channel *(CNGC)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G044900.1
Cluster HCAA Clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
A4A49_15343 No alias putative cyclic nucleotide-gated ion channel 17 0.02 Orthogroups_2024-Update
A4A49_63668 No alias cyclic nucleotide-gated ion channel 1 0.02 Orthogroups_2024-Update
Bradi5g23700 No alias cyclic nucleotide gated channel 5 0.02 Orthogroups_2024-Update
GRMZM2G161800 No alias cyclic nucleotide-binding transporter 1 0.04 Orthogroups_2024-Update
PSME_00032968-RA No alias (at1g19780 : 461.0) member of Cyclic nucleotide gated... 0.04 Orthogroups_2024-Update
Potri.012G002200 No alias cyclic nucleotide gated channel 1 0.02 Orthogroups_2024-Update
evm.model.tig00021244.33 No alias (at4g30560 : 102.0) member of Cyclic nucleotide gated... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA 16Dec
BP GO:0006811 ion transport IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 497 586
IPR005821 Ion_trans_dom 77 402
No external refs found!