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  5. Seita.4G053100.1

Seita.4G053100.1


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex


Gene families : OG_42_0001005 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001005_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Setaria italica: Seita.4G053100.1
Cluster HCAA Clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Bradi1g66430 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Brara.C00076.1 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 Orthogroups_2024-Update
GRMZM2G019251 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.11G141500 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G011700.2 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.05 Orthogroups_2024-Update
Seita.6G153800.1 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 94 162
IPR025715 FoP_C 196 248
No external refs found!