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  5. Seita.4G100000.1

Seita.4G100000.1


Description : lignin polymerization scaffold protein *(CASP)


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G100000.1
Cluster HCAA Clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
A4A49_12663 No alias casparian strip membrane protein 2 0.03 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G038470.3 No alias lignin polymerization scaffold protein *(CASP) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 21 169
No external refs found!