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  5. Seita.4G100100.1

Seita.4G100100.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G100100.1
Cluster HCAA Clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
442088 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
51483 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_36693 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g53377 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g58450 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.05 Orthogroups_2024-Update
Brara.E02827.1 No alias RNA editing factor *(MEF22) 0.05 Orthogroups_2024-Update
Brara.J01844.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Glyma.01G011300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G146900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G209700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU7Hr1G030840.1 No alias RNA editing factor *(MEF29) 0.06 Orthogroups_2024-Update
HORVU7Hr1G051030.9 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
LOC_Os01g46230 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g53050 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
MA_10428121g0010 No alias (at4g37170 : 449.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00002375-RA No alias (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.001G066100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.001G217600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G075200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.006G244500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.007G146800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G048800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.017G137200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.018G092400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.12 Orthogroups_2024-Update
Seita.2G203300.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.5G424500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G130100.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G007900.1 No alias Unknown function 0.14 Orthogroups_2024-Update
Sobic.001G009400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G109000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.009G079400.1 No alias RNA editing factor *(ECD1) 0.01 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.01 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.01 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc04g051480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Solyc11g005970 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.01 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.01 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.01 Orthogroups_2024-Update
Sopen02g025050 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.01 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g022760 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen10g004380 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 231 279
IPR002885 Pentatricopeptide_repeat 331 379
IPR002885 Pentatricopeptide_repeat 64 112
IPR002885 Pentatricopeptide_repeat 203 230
IPR002885 Pentatricopeptide_repeat 172 200
IPR002885 Pentatricopeptide_repeat 399 431
No external refs found!