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  5. Seita.4G101800.1

Seita.4G101800.1


Description : co-factor of RBX1 activity *(DCN1) in CULLIN-based ubiquitylation complexes


Gene families : OG_42_0003804 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G101800.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G025806 No alias Function unknown 0.05 Orthogroups_2024-Update
Sobic.010G095700.1 No alias co-factor of RBX1 activity *(DCN1) in CULLIN-based... 0.05 Orthogroups_2024-Update
Solyc07g066650 No alias Defective in cullin neddylation protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen07g034800 No alias Cullin binding 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005176 PONY_dom 130 239
No external refs found!