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  5. Seita.4G108000.1

Seita.4G108000.1


Description : alanine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond


Gene families : OG_42_0001631 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001631_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G108000.1
Cluster HCAA Clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Cre08.g368900 No alias Alanyl-tRNA synthetase, class IIc 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA 16Dec
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004812 aminoacyl-tRNA ligase activity IEA 16Dec
MF GO:0004813 alanine-tRNA ligase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006419 alanyl-tRNA aminoacylation IEA 16Dec
BP GO:0043039 tRNA aminoacylation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018164 Ala-tRNA-synth_IIc_N 94 658
IPR003156 DHHA1_dom 836 978
IPR012947 tRNA_SAD 756 799
No external refs found!