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  5. Seita.4G160200.1

Seita.4G160200.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G160200.1
Cluster HCAA Clusters: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
A4A49_19521 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_29655 No alias floral homeotic protein globosa 0.02 Orthogroups_2024-Update
Bradi1g77020 No alias AGAMOUS-like 20 0.01 Orthogroups_2024-Update
Bradi5g21700 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
GRMZM2G018589 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.01G020500 No alias AGAMOUS-like 21 0.03 Orthogroups_2024-Update
Glyma.01G064100 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.03G019300 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Glyma.06G117600 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.08G310100 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.19G047600 No alias MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G064150.2 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G095080.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G095200.15 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
HORVU7Hr1G054320.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU7Hr1G081070.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.03 Orthogroups_2024-Update
PSME_00039603-RA No alias (q7xun2|mad17_orysa : 111.0) MADS-box transcription... 0.01 Orthogroups_2024-Update
Potri.004G002400 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.004G131100 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Pp1s163_73V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Seita.1G273400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Seita.5G432700.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Seita.6G156800.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.006G107700.2 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g105800 No alias MADS box transcription factor (AHRD V1 **--... 0.02 Orthogroups_2024-Update
Solyc03g114840 No alias MADS-box protein 1 0.02 Orthogroups_2024-Update
Solyc05g015750 No alias SEPALLATA3 0.02 Orthogroups_2024-Update
Sopen01g045900 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 41 86
No external refs found!