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  5. Seita.4G163500.1

Seita.4G163500.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G163500.1
Cluster HCAA Clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
A4A49_26055 No alias mads-box protein agl42 0.03 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.02 Orthogroups_2024-Update
A4A49_35435 No alias agamous-like mads-box protein agl8 0.03 Orthogroups_2024-Update
At1g01530 No alias AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04] 0.02 Orthogroups_2024-Update
At5g60440 No alias Agamous-like MADS-box protein AGL62... 0.03 Orthogroups_2024-Update
Bradi4g06867 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Brara.B03396.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.05G050700 No alias AGAMOUS-like 19 0.04 Orthogroups_2024-Update
Glyma.10G085100 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.001G251400 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Pp1s118_161V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Sopen06g026710 No alias K-box region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 21 61
No external refs found!