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  5. Seita.4G173000.1

Seita.4G173000.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G173000.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
A4A49_10444 No alias e3 ubiquitin-protein ligase atl9 0.02 Orthogroups_2024-Update
A4A49_10724 No alias ring-h2 finger protein atl33 0.02 Orthogroups_2024-Update
A4A49_29197 No alias ring-h2 finger protein atl73 0.04 Orthogroups_2024-Update
Bradi1g29611 No alias RING-H2 finger A3A 0.12 Orthogroups_2024-Update
Bradi1g45727 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Bradi3g09395 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g38493 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g46030 No alias RING/U-box superfamily protein 0.07 Orthogroups_2024-Update
Bradi3g60770 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.07 Orthogroups_2024-Update
Bradi4g44454 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.04 Orthogroups_2024-Update
Brara.D02790.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G050774 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.04G222300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G140800 No alias carbon/nitrogen insensitive 1 0.03 Orthogroups_2024-Update
Glyma.13G292600 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G195900 No alias TOXICOS EN LEVADURA 2 0.04 Orthogroups_2024-Update
Glyma.16G030900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G231900 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
HORVU2Hr1G074210.1 No alias regulatory ubiquitin-protein ligase *(PRU2) 0.03 Orthogroups_2024-Update
HORVU7Hr1G036380.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os01g11520 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00003016-RA No alias (at1g72200 : 114.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
Potri.001G032300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G244800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G195400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.3G272800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.3G389400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.5G363700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G392900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G095300.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.03 Orthogroups_2024-Update
Seita.9G373200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g045970 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen06g022910 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 98 141
No external refs found!