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  5. Seita.4G177300.1

Seita.4G177300.1


Description : component *(eL8) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001648 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G177300.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
At2g47610 No alias 60S ribosomal protein L7a-1... 0.03 Orthogroups_2024-Update
Bradi4g34750 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Orthogroups_2024-Update
Bradi5g24680 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Orthogroups_2024-Update
Brara.A01492.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.C02368.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.D00049.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.E00034.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.G01985.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.I04344.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.K01473.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Cre12.g529651 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
GRMZM2G178968 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
GRMZM5G870752 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Orthogroups_2024-Update
Glyma.02G002800 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.07 Orthogroups_2024-Update
Glyma.10G006200 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 Orthogroups_2024-Update
Glyma.11G103700 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 Orthogroups_2024-Update
Glyma.12G028500 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G076700.2 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Kfl00122_0060 kfl00122_0060_v1.1 (p35685|rl7a_orysa : 414.0) 60S ribosomal protein L7a -... 0.02 Orthogroups_2024-Update
MA_109678g0010 No alias (p35685|rl7a_orysa : 335.0) 60S ribosomal protein L7a -... 0.05 Orthogroups_2024-Update
Mp2g23250.1 No alias component RPL7a of LSU proteome component 0.05 Orthogroups_2024-Update
Mp8g17650.1 No alias component RPL7a of LSU proteome component 0.04 Orthogroups_2024-Update
PSME_00011086-RA No alias (p35685|rl7a_orysa : 336.0) 60S ribosomal protein L7a -... 0.04 Orthogroups_2024-Update
Pp1s149_30V6 No alias 60s ribosomal protein l7a 0.06 Orthogroups_2024-Update
Pp1s149_35V6 No alias 60s ribosomal protein l7a 0.03 Orthogroups_2024-Update
Pp1s211_31V6 No alias 60s ribosomal protein l7a 0.09 Orthogroups_2024-Update
Pp1s90_23V6 No alias 60s ribosomal protein l7a 0.04 Orthogroups_2024-Update
Seita.6G224900.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.002G258800.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.002G259000.1 No alias component *(eL8) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Solyc01g097760 No alias 60S ribosomal protein L7A-like protein (AHRD V3.3 ***... 0.11 Orthogroups_2024-Update
Solyc06g064470 No alias 60S ribosomal protein L7A-like protein (AHRD V3.3 ***... 0.11 Orthogroups_2024-Update
Sopen01g041360 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.14 Orthogroups_2024-Update
Sopen06g015510 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.07 Orthogroups_2024-Update
Sopen06g022940 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.13 Orthogroups_2024-Update
evm.model.contig_3485.8 No alias (p35685|rl7a_orysa : 308.0) 60S ribosomal protein L7a -... 0.13 Orthogroups_2024-Update
evm.model.tig00000128.22 No alias (p35685|rl7a_orysa : 240.0) 60S ribosomal protein L7a -... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 115 205
No external refs found!