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  5. Seita.4G177800.1

Seita.4G177800.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G177800.1
Cluster HCAA Clusters: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
A4A49_14436 No alias agamous-like mads-box protein agl11 0.02 Orthogroups_2024-Update
A4A49_26055 No alias mads-box protein agl42 0.03 Orthogroups_2024-Update
At1g26310 No alias Transcription factor CAULIFLOWER... 0.02 Orthogroups_2024-Update
At3g61120 No alias Agamous-like MADS-box protein AGL13... 0.02 Orthogroups_2024-Update
At4g36590 No alias MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222] 0.03 Orthogroups_2024-Update
Bradi1g59250 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi5g12437 No alias AGAMOUS-like 16 0.04 Orthogroups_2024-Update
Brara.A03890.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.C00925.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
GRMZM2G159397 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.15G058000 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.17G081200 No alias AGAMOUS-like 8 0.02 Orthogroups_2024-Update
HORVU5Hr1G110470.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g23950 No alias OsMADS59 - MADS-box family gene with MIKCc type-box 0.03 Orthogroups_2024-Update
LOC_Os06g30830 No alias OsMADS76 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g32948 No alias OsMADS8 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
PSME_00017434-RA No alias (at4g11880 : 100.0) AGL12, AGL14, and AGL17 are all... 0.06 Orthogroups_2024-Update
Potri.006G048700 No alias AGAMOUS-like 18 0.02 Orthogroups_2024-Update
Seita.9G561000.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g060300 No alias damaged DNA binding 2 (AHRD V3.3 --* AT5G58760.2) 0.03 Orthogroups_2024-Update
Solyc03g114830 No alias FRUITFULL-like MADS-box 2 0.02 Orthogroups_2024-Update
Solyc05g015750 No alias SEPALLATA3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 16 60
No external refs found!