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  5. Seita.4G178000.1

Seita.4G178000.1


Description : EC_1.1 oxidoreductase acting on CH-OH group of donor


Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G178000.1
Cluster HCAA Clusters: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AC203909.3_FG003 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
At1g26400 No alias Berberine bridge enzyme-like 5... 0.04 Orthogroups_2024-Update
At1g26410 No alias Berberine bridge enzyme-like 6... 0.03 Orthogroups_2024-Update
Bradi5g17300 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Brara.B02784.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Brara.F03744.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.02 Orthogroups_2024-Update
Glyma.04G113400 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.001G463100 No alias FAD-binding Berberine family protein 0.03 Orthogroups_2024-Update
Potri.011G162732 No alias FAD-binding Berberine family protein 0.02 Orthogroups_2024-Update
Seita.4G178500.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.04 Orthogroups_2024-Update
Sobic.010G162400.1 No alias EC_1.1 oxidoreductase acting on CH-OH group of donor 0.04 Orthogroups_2024-Update
Solyc02g070200 No alias FAD-binding Berberine family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc02g079440 No alias FAD-binding Berberine family protein (AHRD V3.3 *** AT4G20860.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA 16Dec
MF GO:0050660 flavin adenine dinucleotide binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR012951 BBE 463 521
IPR006094 Oxid_FAD_bind_N 78 217
No external refs found!