1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.4G191000.1

Seita.4G191000.1


Description : stability factor *(PPR10)


Gene families : OG_42_0002729 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002729_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G191000.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Bradi1g22890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Orthogroups_2024-Update
GRMZM2G177169 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.09G056200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.15G162500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G035060.2 No alias stability factor *(PPR10) 0.03 Orthogroups_2024-Update
Kfl00277_0020 kfl00277_0020_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00485_0030 kfl00485_0030_v1.1 (at1g74850 : 214.0) Present in transcriptionally active... 0.01 Orthogroups_2024-Update
LOC_Os05g19380 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G297300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.010G215500.1 No alias stability factor *(PPR10) 0.05 Orthogroups_2024-Update
Solyc07g017760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen07g006580 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 222
IPR002885 Pentatricopeptide_repeat 406 434
IPR002885 Pentatricopeptide_repeat 584 642
IPR002885 Pentatricopeptide_repeat 241 271
IPR002885 Pentatricopeptide_repeat 662 692
IPR033443 PPR_long 450 554
IPR002885 Pentatricopeptide_repeat 738 759
IPR002885 Pentatricopeptide_repeat 702 731
IPR002885 Pentatricopeptide_repeat 279 320
IPR002885 Pentatricopeptide_repeat 349 396
No external refs found!