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  5. Seita.4G193400.1

Seita.4G193400.1


Description : bHLH-type transcription factor


Gene families : OG_42_0003018 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003018_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G193400.1
Cluster HCAA Clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g08220 No alias expressed protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0010206 photosystem II repair IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
BP GO:0030091 protein repair IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!