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  5. Seita.4G219400.1

Seita.4G219400.1


Description : component *(LHCa3) of LHC-I complex


Gene families : OG_42_0005254 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G219400.1
Cluster HCAA Clusters: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
160411 No alias photosystem I light harvesting complex gene 3 0.03 Orthogroups_2024-Update
A4A49_09113 No alias chlorophyll a-b binding protein 8, chloroplastic 0.05 Orthogroups_2024-Update
A4A49_28400 No alias chlorophyll a-b binding protein 8, chloroplastic 0.07 Orthogroups_2024-Update
At1g61520 No alias Chlorophyll a-b binding protein, chloroplastic... 0.06 Orthogroups_2024-Update
Bradi3g07190 No alias photosystem I light harvesting complex gene 3 0.05 Orthogroups_2024-Update
Brara.A02541.1 No alias component *(LHCa3) of LHC-I complex 0.07 Orthogroups_2024-Update
Brara.I01499.1 No alias component *(LHCa3) of LHC-I complex 0.05 Orthogroups_2024-Update
Cre11.g467573 No alias photosystem I light harvesting complex gene 3 0.04 Orthogroups_2024-Update
Glyma.02G309500 No alias photosystem I light harvesting complex gene 3 0.09 Orthogroups_2024-Update
Glyma.14G003400 No alias photosystem I light harvesting complex gene 3 0.07 Orthogroups_2024-Update
HORVU6Hr1G033160.11 No alias component *(LHCa3) of LHC-I complex 0.04 Orthogroups_2024-Update
Kfl00560_0090 kfl00560_0090_v1.1 (at1g61520 : 268.0) PSI type III chlorophyll a/b-binding... 0.03 Orthogroups_2024-Update
LOC_Os02g10390 No alias chlorophyll A-B binding protein, putative, expressed 0.04 Orthogroups_2024-Update
MA_815900g0010 No alias (at1g61520 : 372.0) PSI type III chlorophyll a/b-binding... 0.04 Orthogroups_2024-Update
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.03 Orthogroups_2024-Update
PSME_00027596-RA No alias (at1g61520 : 359.0) PSI type III chlorophyll a/b-binding... 0.03 Orthogroups_2024-Update
Potri.014G172400 No alias photosystem I light harvesting complex gene 3 0.02 Orthogroups_2024-Update
Pp1s197_123V6 No alias type iii chlorophyll a b-binding protein 0.05 Orthogroups_2024-Update
Pp1s214_86V6 No alias type iii chlorophyll a b-binding protein 0.05 Orthogroups_2024-Update
Pp1s429_33V6 No alias type iii chlorophyll a b-binding protein 0.05 Orthogroups_2024-Update
Sobic.010G189300.1 No alias component *(LHCa3) of LHC-I complex 0.17 Orthogroups_2024-Update
Solyc10g007690 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc12g011280 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.11 Orthogroups_2024-Update
Sopen10g003600 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update
Sopen12g006610 No alias Chlorophyll A-B binding protein 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 57 235
No external refs found!