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  5. Seita.4G225600.1

Seita.4G225600.1


Description : FRS/FRF-type transcription factor


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G225600.1
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
A4A49_58781 No alias protein far-red elongated hypocotyl 3 0.02 Orthogroups_2024-Update
Glyma.02G312300 No alias FAR1-related sequence 9 0.02 Orthogroups_2024-Update
Glyma.20G024700 No alias FAR1-related sequence 6 0.02 Orthogroups_2024-Update
Glyma.20G053500 No alias FAR1-related sequence 3 0.05 Orthogroups_2024-Update
HORVU2Hr1G028850.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU7Hr1G015880.1 No alias FRS/FRF-type transcription factor 0.04 Orthogroups_2024-Update
Seita.2G152300.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Solyc07g043260 No alias Far1-related sequence 2-like protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen07g022840 No alias MULE transposase domain 0.03 Orthogroups_2024-Update
Sopen09g030440 No alias FAR1 DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 261 353
IPR007527 Znf_SWIM 548 574
IPR004330 FAR1_DNA_bnd_dom 83 173
No external refs found!