1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.4G225800.1

Seita.4G225800.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G225800.1
Cluster HCAA Clusters: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
102435 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
123655 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
125444 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
128850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
A4A49_23672 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.03 Orthogroups_2024-Update
At2g01510 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.04 Orthogroups_2024-Update
At2g39620 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.04 Orthogroups_2024-Update
At3g49170 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Orthogroups_2024-Update
At4g18840 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Orthogroups_2024-Update
At4g31070 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.06 Orthogroups_2024-Update
Bradi1g01280 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g14160 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g20570 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g22990 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi1g47160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g51700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g54840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g58370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Bradi1g59070 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Bradi2g04723 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 Orthogroups_2024-Update
Bradi2g09441 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g25480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Orthogroups_2024-Update
Bradi2g48635 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g50550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g62320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g47510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Bradi4g28137 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi4g41840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00314.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.A01120.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E02154.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.F01240.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G02157.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G03498.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.02G160400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.02G250600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G285432 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G213800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G273200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G063370.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
HORVU3Hr1G058070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G080120.11 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU4Hr1G064880.2 No alias Unknown function 0.06 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.09 Orthogroups_2024-Update
HORVU7Hr1G038460.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g15530 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g06880 No alias EMB2758, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g43430 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g44930 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
MA_105629g0010 No alias (at3g49142 : 670.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_11454g0010 No alias (at4g13650 : 676.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_122899g0010 No alias (at3g57430 : 674.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_139163g0010 No alias (at4g13650 : 549.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_141034g0010 No alias (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_18165g0010 No alias (at3g12770 : 580.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
MA_210823g0010 No alias (at4g37170 : 594.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_291996g0010 No alias (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_36643g0010 No alias (at3g03580 : 738.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_50118g0010 No alias (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_6329g0010 No alias (at4g02750 : 542.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_656915g0010 No alias (at4g18750 : 657.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_71420g0010 No alias (at2g22070 : 548.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_724726g0010 No alias (at1g11290 : 611.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_77437g0010 No alias (at1g11290 : 636.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_8319g0010 No alias (at4g02750 : 466.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_9360929g0010 No alias (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_9384g0020 No alias (at3g49170 : 527.0) embryo defective 2261 (EMB2261);... 0.02 Orthogroups_2024-Update
MA_944980g0010 No alias (at3g12770 : 548.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_98224g0010 No alias (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00001133-RA No alias (at2g03880 : 550.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00002640-RA No alias (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00003567-RA No alias (at4g13650 : 593.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00003874-RA No alias (at4g33170 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.03 Orthogroups_2024-Update
PSME_00007759-RA No alias (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00010401-RA No alias (at4g18750 : 645.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00011508-RA No alias (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00012885-RA No alias (at1g08070 : 603.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
PSME_00013106-RA No alias (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00014659-RA No alias (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00017819-RA No alias (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00029481-RA No alias (at4g18750 : 670.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00032333-RA No alias (at4g18750 : 689.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036492-RA No alias (at2g22070 : 524.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00038079-RA No alias (at3g02010 : 593.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00039409-RA No alias (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00042206-RA No alias (at1g11290 : 595.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00055621-RA No alias (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00056153-RA No alias (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... 0.08 Orthogroups_2024-Update
PSME_00056507-RA No alias (at1g16480 : 719.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00057163-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
Potri.005G019400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G215500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G252400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s13_264V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G302700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G227100.1 No alias RNA editing factor *(MEF21) 0.09 Orthogroups_2024-Update
Seita.5G055200.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Seita.6G130100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.7G277600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.8G121200.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Seita.8G163400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G489500.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G058400.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.1 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.12 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.05 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G141600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.04 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.03 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g092150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Sopen01g015270 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g015160 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g022420 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g002630 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g017250 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 242 289
IPR002885 Pentatricopeptide_repeat 113 158
IPR002885 Pentatricopeptide_repeat 343 391
IPR002885 Pentatricopeptide_repeat 213 241
IPR002885 Pentatricopeptide_repeat 317 342
IPR002885 Pentatricopeptide_repeat 185 212
IPR002885 Pentatricopeptide_repeat 83 110
No external refs found!