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  5. Seita.4G227600.1

Seita.4G227600.1


Description : subunit beta2 of coat protein complex


Gene families : OG_42_0001146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G227600.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
A4A49_56618 No alias coatomer subunit beta'-2 0.02 Orthogroups_2024-Update
Bradi1g51210 No alias Coatomer, beta\' subunit 0.08 Orthogroups_2024-Update
Bradi3g07926 No alias Coatomer, beta\' subunit 0.06 Orthogroups_2024-Update
Brara.H00818.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.H00819.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.K00704.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Cre02.g118500 No alias Coatomer, beta\' subunit 0.05 Orthogroups_2024-Update
HORVU6Hr1G036660.13 No alias subunit beta2 of coat protein complex 0.03 Orthogroups_2024-Update
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.04 Orthogroups_2024-Update
Pp1s243_63V6 No alias coatomer beta 0.07 Orthogroups_2024-Update
Pp1s61_1V6 No alias coatomer beta 0.07 Orthogroups_2024-Update
Pp1s79_180V6 No alias coatomer beta 0.04 Orthogroups_2024-Update
Sobic.004G088501.1 No alias subunit beta2 of coat protein complex 0.04 Orthogroups_2024-Update
Sobic.010G178600.1 No alias subunit beta2 of coat protein complex 0.05 Orthogroups_2024-Update
Solyc03g120270 No alias Coatomer beta subunit, putative (AHRD V3.3 *** B9SQC0_RICCO) 0.02 Orthogroups_2024-Update
Solyc06g066730 No alias Coatomer beta subunit, putative (AHRD V3.3 *** B9SQC0_RICCO) 0.04 Orthogroups_2024-Update
Sopen03g039150 No alias Coatomer WD associated region 0.02 Orthogroups_2024-Update
evm.model.contig_4516.1 No alias (at1g79990 : 963.0) structural molecules; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
evm.model.tig00020903.33 No alias (at1g79990 : 1008.0) structural molecules; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0006886 intracellular protein transport IEA 16Dec
BP GO:0016192 vesicle-mediated transport IEA 16Dec
CC GO:0030117 membrane coat IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019211 phosphatase activator activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 319 763
IPR001680 WD40_repeat 220 256
IPR001680 WD40_repeat 177 215
IPR001680 WD40_repeat 133 171
IPR001680 WD40_repeat 91 127
No external refs found!