- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : component *(RPP3) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0007498 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007498_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.4G241800.1 | |
| Cluster | HCAA Clusters: Cluster_108 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 105823 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| At4g25890 | No alias | 60S acidic ribosomal protein P3-1... | 0.03 | Orthogroups_2024-Update | |
| Brara.B01223.1 | No alias | component *(RPP3) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Brara.J01152.1 | No alias | component *(RPP3) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Glyma.08G131500 | No alias | 60S acidic ribosomal protein family | 0.05 | Orthogroups_2024-Update | |
| HORVU7Hr1G096990.2 | No alias | component *(RPP3) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Mp3g07010.1 | No alias | component RPP3 of LSU proteome component | 0.03 | Orthogroups_2024-Update | |
| Potri.003G010200 | No alias | 60S acidic ribosomal protein family | 0.03 | Orthogroups_2024-Update | |
| Potri.009G032600 | No alias | 60S acidic ribosomal protein family | 0.04 | Orthogroups_2024-Update | |
| Pp1s167_19V6 | No alias | 60s acidic ribosomal protein p3 | 0.05 | Orthogroups_2024-Update | |
| Pp1s266_20V6 | No alias | 60s acidic ribosomal protein p3 | 0.09 | Orthogroups_2024-Update | |
| Sobic.010G251600.1 | No alias | component *(RPP3) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Solyc07g009330 | No alias | Auxin induced-like protein (AHRD V3.3 *** E0Z5V6_PICSI) | 0.12 | Orthogroups_2024-Update | |
| Sopen07g005080 | No alias | 60s Acidic ribosomal protein | 0.08 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |