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  5. Seita.4G242200.1

Seita.4G242200.1


Description : mRNA unwinding factor *(eIF4A))


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.4G242200.1
Cluster HCAA Clusters: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
143895 No alias eukaryotic translation initiation factor 4A1 0.15 Orthogroups_2024-Update
A4A49_62264 No alias eukaryotic initiation factor 4a-11 0.04 Orthogroups_2024-Update
At1g54270 No alias eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1] 0.08 Orthogroups_2024-Update
At1g72730 No alias Eukaryotic initiation factor 4A-3... 0.05 Orthogroups_2024-Update
At3g19760 No alias Eukaryotic initiation factor 4A-III homolog... 0.05 Orthogroups_2024-Update
Brara.A02854.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.03 Orthogroups_2024-Update
Brara.A03225.1 No alias mRNA unwinding factor *(eIF4A)) 0.1 Orthogroups_2024-Update
Brara.B02039.1 No alias mRNA unwinding factor *(eIF4A)) 0.04 Orthogroups_2024-Update
Brara.E02231.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.19 Orthogroups_2024-Update
Glyma.09G052500 No alias eukaryotic initiation factor 4A-III 0.03 Orthogroups_2024-Update
Glyma.13G106200 No alias eukaryotic translation initiation factor 4A1 0.05 Orthogroups_2024-Update
Glyma.15G026100 No alias eif4a-2 0.03 Orthogroups_2024-Update
Glyma.17G053200 No alias eif4a-2 0.08 Orthogroups_2024-Update
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.16 Orthogroups_2024-Update
PSME_00024625-RA No alias (p41380|if4a3_nicpl : 382.0) Eukaryotic initiation... 0.04 Orthogroups_2024-Update
PSME_00034714-RA No alias (p41380|if4a3_nicpl : 604.0) Eukaryotic initiation... 0.02 Orthogroups_2024-Update
Pp1s31_150V6 No alias Eukaryotic initiation factor 4A-9 (ATP-dependent RNA... 0.09 Orthogroups_2024-Update
Pp1s77_16V6 No alias No description available 0.11 Orthogroups_2024-Update
Sobic.010G251100.1 No alias mRNA unwinding factor *(eIF4A)) 0.04 Orthogroups_2024-Update
Solyc08g062800 No alias RNA helicase DEAD26 0.13 Orthogroups_2024-Update
Solyc11g033280 No alias Dead box ATP-dependent RNA helicase, putative (AHRD V3.3... 0.11 Orthogroups_2024-Update
Solyc12g095990 No alias RNA helicase DEAD40 0.04 Orthogroups_2024-Update
Sopen08g018310 No alias DEAD/DEAH box helicase 0.2 Orthogroups_2024-Update
Sopen12g031880 No alias DEAD/DEAH box helicase 0.12 Orthogroups_2024-Update
Sopen12g031890 No alias DEAD/DEAH box helicase 0.07 Orthogroups_2024-Update
evm.model.tig00000970.17 No alias (p35683|if4a_orysa : 555.0) Eukaryotic initiation factor... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 267 375
IPR011545 DEAD/DEAH_box_helicase_dom 66 227
No external refs found!