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  5. Seita.5G002400.1

Seita.5G002400.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G002400.1
Cluster HCAA Clusters: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
At1g03840 No alias Uncharacterized protein At1g03840 (Fragment)... 0.04 Orthogroups_2024-Update
Brara.J02840.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Glyma.10G029700 No alias indeterminate(ID)-domain 12 0.02 Orthogroups_2024-Update
LOC_Os02g31890 No alias ZOS2-08 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
Potri.003G040100 No alias indeterminate(ID)-domain 11 0.02 Orthogroups_2024-Update
Seita.2G224800.1 No alias C2H2 subclass IDD transcription factor 0.01 Orthogroups_2024-Update
Seita.6G177800.1 No alias C2H2 subclass IDD transcription factor 0.01 Orthogroups_2024-Update
Sobic.001G443000.1 No alias C2H2 subclass IDD transcription factor 0.01 Orthogroups_2024-Update
Sopen11g027970 No alias Zinc finger, C2H2 type 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 73 95
No external refs found!