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  5. Seita.5G005200.1

Seita.5G005200.1


Description : E3 ubiquitin ligase *(SINA)


Gene families : OG_42_0000730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G005200.1
Cluster HCAA Clusters: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
At3g58040 No alias E3 ubiquitin-protein ligase... 0.03 Orthogroups_2024-Update
Brara.H01506.1 No alias E3 ubiquitin ligase *(SINA) 0.04 Orthogroups_2024-Update
Glyma.19G256200 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update
Kfl00046_0240 kfl00046_0240_v1.1 (at3g58040 : 393.0) Encodes a RING finger domain... 0.02 Orthogroups_2024-Update
LOC_Os01g13370 No alias seven in absentia protein family domain containing... 0.04 Orthogroups_2024-Update
LOC_Os03g24040 No alias seven in absentia protein family domain containing... 0.03 Orthogroups_2024-Update
MA_161463g0020 No alias (at3g58040 : 321.0) Encodes a RING finger domain... 0.03 Orthogroups_2024-Update
Sobic.003G005100.1 No alias E3 ubiquitin ligase *(SINA) 0.04 Orthogroups_2024-Update
Sobic.009G087800.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update
Sopen02g019030 No alias Seven in absentia protein family 0.03 Orthogroups_2024-Update
Sopen03g023020 No alias Seven in absentia protein family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
BP GO:0007275 multicellular organism development IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 94 293
No external refs found!