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  5. Seita.5G014000.1

Seita.5G014000.1


Description : mRNA decay factor *(PAT1)


Gene families : OG_42_0001618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G014000.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Brara.A02021.1 No alias mRNA decay factor *(PAT1) 0.03 Orthogroups_2024-Update
Brara.F01158.1 No alias mRNA decay factor *(PAT1) 0.04 Orthogroups_2024-Update
GRMZM2G118098 No alias Function unknown 0.02 Orthogroups_2024-Update
Glyma.08G171800 No alias Function unknown 0.03 Orthogroups_2024-Update
Kfl00377_0140 kfl00377_0140_v1.1 (at1g79090 : 251.0) FUNCTIONS IN: molecular_function... 0.01 Orthogroups_2024-Update
Potri.006G021900 No alias Topoisomerase II-associated protein PAT1 0.04 Orthogroups_2024-Update
Potri.016G020100 No alias Topoisomerase II-associated protein PAT1 0.03 Orthogroups_2024-Update
Pp1s16_396V6 No alias hypothetical protein similar to Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Sopen12g002360 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!