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  5. Seita.5G027700.1

Seita.5G027700.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G027700.1
Cluster HCAA Clusters: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
At5g07430 No alias Probable pectinesterase 50... 0.02 Orthogroups_2024-Update
Brara.B00244.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
GRMZM2G070913 No alias pectinesterase 11 0.03 Orthogroups_2024-Update
Glyma.01G066300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os04g46740 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
Potri.006G134800 No alias pectin methylesterase 1 0.05 Orthogroups_2024-Update
Potri.007G015700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G110700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s45_249V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.3G174200.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Seita.5G313900.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Solyc12g098340 No alias Pectinesterase (AHRD V3.3 *** K4DHK8_SOLLC) 0.04 Orthogroups_2024-Update
Sopen02g029180 No alias Pectinesterase 0.03 Orthogroups_2024-Update
Sopen07g022810 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen07g033560 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen09g034620 No alias Pectinesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 34 313
No external refs found!