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  5. Seita.5G028800.1

Seita.5G028800.1


Description : RNA editing factor *(PGN)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G028800.1
Cluster HCAA Clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
At2g03880 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.01 Orthogroups_2024-Update
At3g23330 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Orthogroups_2024-Update
At5g39680 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.02 Orthogroups_2024-Update
Brara.E00200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G00509.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.J00787.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
GRMZM2G332843 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
LOC_Os03g56850 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.02 Orthogroups_2024-Update
Potri.001G066100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.007G050200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.010G086200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.012G048800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 32 79
IPR002885 Pentatricopeptide_repeat 335 382
IPR002885 Pentatricopeptide_repeat 213 239
IPR002885 Pentatricopeptide_repeat 410 434
IPR002885 Pentatricopeptide_repeat 141 169
No external refs found!