1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G038400.1

Seita.5G038400.1


Description : substrate adaptor of SCF E3 ubiquitin ligase complex


Gene families : OG_42_0002133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002133_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G038400.1
Cluster HCAA Clusters: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
At2g32560 No alias F-box protein At2g32560 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY82] 0.02 Orthogroups_2024-Update
Bradi2g10870 No alias F-box family protein 0.02 Orthogroups_2024-Update
Glyma.02G278300 No alias F-box family protein 0.03 Orthogroups_2024-Update
Glyma.03G126600 No alias F-box family protein 0.05 Orthogroups_2024-Update
Glyma.07G235500 No alias F-box family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G040880.4 No alias substrate adaptor of SCF E3 ubiquitin ligase complex 0.05 Orthogroups_2024-Update
LOC_Os01g17390 No alias OsFBX5 - F-box domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_35513g0010 No alias (at2g32560 : 110.0) F-box family protein; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
PSME_00037666-RA No alias (at2g32560 : 228.0) F-box family protein; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Potri.001G273900 No alias F-box family protein 0.05 Orthogroups_2024-Update
Pp1s215_10V6 No alias cyclin-like f-box 0.02 Orthogroups_2024-Update
Sobic.003G134300.1 No alias substrate adaptor of SCF E3 ubiquitin ligase complex 0.12 Orthogroups_2024-Update
Solyc11g065000 No alias F-box family protein (AHRD V3.3 *** B9HNI4_POPTR) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 93 133
No external refs found!