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  5. Seita.5G042800.1

Seita.5G042800.1


Description : channel-forming component *(Tom40) of outer mitochondrion membrane TOM translocation system


Gene families : OG_42_0003040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G042800.1
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
403082 No alias translocase of the outer mitochondrial membrane 40 0.05 Orthogroups_2024-Update
Bradi2g10420 No alias translocase of the outer mitochondrial membrane 40 0.1 Orthogroups_2024-Update
Glyma.08G048100 No alias translocase of the outer mitochondrial membrane 40 0.05 Orthogroups_2024-Update
HORVU3Hr1G039040.6 No alias channel-forming component *(Tom40) of outer... 0.08 Orthogroups_2024-Update
HORVU4Hr1G051720.1 No alias channel-forming component *(Tom40) of outer... 0.04 Orthogroups_2024-Update
LOC_Os01g16910 No alias outer mitochondrial membrane porin, putative, expressed 0.04 Orthogroups_2024-Update
Potri.014G004100 No alias translocase of the outer mitochondrial membrane 40 0.05 Orthogroups_2024-Update
Potri.014G010200 No alias translocase of the outer mitochondrial membrane 40 0.03 Orthogroups_2024-Update
Sobic.003G130000.1 No alias channel-forming component *(Tom40) of outer... 0.15 Orthogroups_2024-Update
Solyc06g007710 No alias Mitochondrial import receptor subunit tom40, putative... 0.06 Orthogroups_2024-Update
Sopen06g034150 No alias Eukaryotic porin 0.06 Orthogroups_2024-Update
evm.model.contig_2033.1 No alias (at3g20000 : 206.0) Encodes a component of the TOM... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027246 Porin_Euk/Tom40 53 325
No external refs found!