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  5. Seita.5G043000.1

Seita.5G043000.1


Description : component *(eL30) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001724 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001724_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G043000.1
Cluster HCAA Clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
19071 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
A4A49_02333 No alias 60s ribosomal protein l30-2 0.04 Orthogroups_2024-Update
A4A49_19973 No alias 60s ribosomal protein l30-2 0.03 Orthogroups_2024-Update
At1g77940 No alias 60S ribosomal protein L30-2... 0.04 Orthogroups_2024-Update
Bradi2g10400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.04 Orthogroups_2024-Update
Bradi2g21770 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
Brara.A02913.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.C03701.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.E02321.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Cre10.g420750 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.06 Orthogroups_2024-Update
GRMZM2G027728 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 Orthogroups_2024-Update
GRMZM2G044137 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
Glyma.10G002400 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 Orthogroups_2024-Update
HORVU3Hr1G038950.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
LOC_Os01g16890 No alias ribosomal protein L7Ae, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os01g59730 No alias ribosomal protein L7Ae, putative, expressed 0.02 Orthogroups_2024-Update
MA_10431626g0010 No alias (o49884|rl30_luplu : 184.0) 60S ribosomal protein L30 -... 0.03 Orthogroups_2024-Update
MA_6354g0010 No alias (o49884|rl30_luplu : 204.0) 60S ribosomal protein L30 -... 0.03 Orthogroups_2024-Update
Mp7g01690.1 No alias component RPL30 of LSU proteome component 0.04 Orthogroups_2024-Update
PSME_00026808-RA No alias (o49884|rl30_luplu : 160.0) 60S ribosomal protein L30 -... 0.04 Orthogroups_2024-Update
PSME_00033349-RA No alias (o49884|rl30_luplu : 192.0) 60S ribosomal protein L30 -... 0.05 Orthogroups_2024-Update
Pp1s106_167V6 No alias ribosomal protein l30 0.02 Orthogroups_2024-Update
Pp1s13_391V6 No alias ribosomal protein l30 0.04 Orthogroups_2024-Update
Pp1s41_251V6 No alias ribosomal protein l30 0.05 Orthogroups_2024-Update
Sobic.009G179100.1 No alias component *(eL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc01g009100 No alias 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU) 0.04 Orthogroups_2024-Update
Solyc04g072660 No alias 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU) 0.03 Orthogroups_2024-Update
Solyc11g071490 No alias 60S ribosomal protein L30 (AHRD V3.3 *** RL30_LUPLU) 0.04 Orthogroups_2024-Update
Sopen01g004590 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.06 Orthogroups_2024-Update
Sopen11g029180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 0.07 Orthogroups_2024-Update
evm.model.contig_3502.5 No alias (q9sdg6|rl30_orysa : 151.0) 60S ribosomal protein L30 -... 0.07 Orthogroups_2024-Update
evm.model.tig00001164.6 No alias (o49884|rl30_luplu : 168.0) 60S ribosomal protein L30 -... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 12 105
No external refs found!