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  5. Seita.5G044900.1

Seita.5G044900.1


Description : non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex


Gene families : OG_42_0002113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G044900.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Bradi1g62720 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.08 Orthogroups_2024-Update
Bradi2g10278 No alias CLP protease R subunit 4 0.11 Orthogroups_2024-Update
Brara.A01840.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 Orthogroups_2024-Update
Brara.H02844.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 Orthogroups_2024-Update
Cre03.g204350 No alias CLP protease R subunit 4 0.01 Orthogroups_2024-Update
Cre07.g331500 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.01 Orthogroups_2024-Update
GRMZM2G030072 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.04 Orthogroups_2024-Update
HORVU3Hr1G038610.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 Orthogroups_2024-Update
LOC_Os03g22430 No alias OsClp5 - Putative Clp protease homologue, expressed 0.02 Orthogroups_2024-Update
Mp7g03170.1 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Orthogroups_2024-Update
Pp1s217_29V6 No alias atp-dependent clp protease proteolytic subunit 0.02 Orthogroups_2024-Update
Sobic.001G375000.2 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.06 Orthogroups_2024-Update
Sobic.003G128400.1 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.13 Orthogroups_2024-Update
Sopen08g026400 No alias Clp protease 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 90 271
No external refs found!