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  5. Seita.5G056300.1

Seita.5G056300.1


Description : regulatory protein of RNA homeostasis


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G056300.1
Cluster HCAA Clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
A4A49_14223 No alias zinc finger ccch domain-containing protein 67 0.03 Orthogroups_2024-Update
A4A49_36084 No alias zinc finger ccch domain-containing protein 32 0.02 Orthogroups_2024-Update
Brara.A03862.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
Brara.C01681.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Brara.E03556.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
GRMZM2G036837 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Orthogroups_2024-Update
GRMZM2G087032 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
GRMZM2G146514 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
HORVU3Hr1G035750.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
LOC_Os01g15350 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g21700 No alias zinc finger C-x8-C-x5-C-x3-H type family protein, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0000814 ESCRT II complex IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 337 362
IPR000571 Znf_CCCH 137 162
IPR000571 Znf_CCCH 93 118
IPR000571 Znf_CCCH 43 68
IPR000571 Znf_CCCH 291 316
No external refs found!