1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G056600.1

Seita.5G056600.1


Description : Unknown function


Gene families : OG_42_0000263 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000263_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G056600.1
Cluster HCAA Clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Bradi2g43971 No alias F-box family protein with a domain of unknown function (DUF295) 0.03 Orthogroups_2024-Update
Bradi4g14891 No alias F-box family protein with a domain of unknown function (DUF295) 0.03 Orthogroups_2024-Update
LOC_Os03g58764 No alias OsFBDUF18 - F-box and DUF domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g49340 No alias OsFBDUF35 - F-box and DUF domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g36830 No alias expressed protein 0.03 Orthogroups_2024-Update
Solyc02g092020 No alias F-box protein SKIP23 (AHRD V3.3 *** A0A151TCP0_CAJCA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR005174 DUF295 308 348
IPR001810 F-box_dom 10 50
No external refs found!