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At4g24780


Description : Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g24780
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
A4A49_18000 No alias putative pectate lyase 10 0.03 Orthogroups_2024-Update
LOC_Os04g05050 No alias pectate lyase precursor, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G182200 No alias Pectate lyase family protein 0.05 Orthogroups_2024-Update
Solyc03g071570 No alias Pectate lyase (AHRD V3.3 *** K4BHI7_SOLLC) 0.03 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen06g034960 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 145 325
No external refs found!