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  5. Seita.5G082500.1

Seita.5G082500.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000370 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G082500.1
Cluster HCAA Clusters: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
Brara.J00118.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G103755 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G230100 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g19800 No alias zinc finger, C3HC4 type, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00004790-RA No alias (at3g47550 : 182.0) RING/FYVE/PHD zinc finger... 0.02 Orthogroups_2024-Update
Solyc05g008390 No alias RING/FYVE/PHD zinc finger superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 59 104
IPR022143 DUF3675 110 226
No external refs found!