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  5. Seita.5G102100.1

Seita.5G102100.1


Description : Unknown function


Gene families : OG_42_0000478 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G102100.1
Cluster HCAA Clusters: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
Bradi1g15161 No alias XH/XS domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.15G204933 No alias XH/XS domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.18G038200 No alias XH/XS domain-containing protein 0.03 Orthogroups_2024-Update
Potri.001G240732 No alias XH/XS domain-containing protein 0.02 Orthogroups_2024-Update
Seita.7G042000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G176000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR005379 Uncharacterised_XH 1 126
No external refs found!