1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G102700.1

Seita.5G102700.1


Description : type-I-residues E3 ubiquitin ligase *(PRT6)


Gene families : OG_42_0002846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G102700.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03180 No alias proteolysis 6 0.07 Orthogroups_2024-Update
Glyma.07G132300 No alias proteolysis 6 0.07 Orthogroups_2024-Update
HORVU3Hr1G013300.5 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.07 Orthogroups_2024-Update
Kfl00338_0040 kfl00338_0040_v1.1 (at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.04 Orthogroups_2024-Update
PSME_00008232-RA No alias (at5g02310 : 269.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.04 Orthogroups_2024-Update
PSME_00008233-RA No alias (at5g02310 : 427.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.03 Orthogroups_2024-Update
Pp1s356_43V6 No alias ubiquitin ligase e3 0.02 Orthogroups_2024-Update
Pp1s67_180V6 No alias ubiquitin ligase e3 0.02 Orthogroups_2024-Update
Sobic.003G072200.1 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.08 Orthogroups_2024-Update
Solyc09g010830 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** W9SG42_9ROSA) 0.03 Orthogroups_2024-Update
Solyc10g084760 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** W9SG42_9ROSA) 0.03 Orthogroups_2024-Update
Sopen09g005560 No alias Putative zinc finger in N-recognin (UBR box) 0.02 Orthogroups_2024-Update
evm.model.tig00001107.13 No alias (at5g02310 : 113.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002790 peptide secretion IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0009306 protein secretion IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR003126 Znf_UBR 123 189
No external refs found!