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  5. Seita.5G120400.1

Seita.5G120400.1


Description : regulatory protein *(LOTR) involved in Casparian strip formation


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G120400.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
103145 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
80985 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
A4A49_09629 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Brara.E00409.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H00060.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G151319 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
Glyma.14G213700 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
HORVU7Hr1G108240.10 No alias Unknown function 0.04 Orthogroups_2024-Update
PSME_00036533-RA No alias (at5g18460 : 272.0) Protein of Unknown Function... 0.02 Orthogroups_2024-Update
Seita.8G137200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G217700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G217766.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G162000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g050490 No alias carboxyl-terminal peptidase (DUF239) (AHRD V3.3 *** AT5G18460.1) 0.03 Orthogroups_2024-Update
Sopen01g033120 No alias Domain of unknown function (DUF239) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR004314 Neprosin 209 419
IPR025521 Neprosin_propep 68 184
No external refs found!