1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G126400.1

Seita.5G126400.1


Description : E3 ubiquitin ligase *(DRR1)


Gene families : OG_42_0000431 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000431_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G126400.1
Cluster HCAA Clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Brara.I05095.1 No alias E3 ubiquitin ligase *(RIE1) 0.02 Orthogroups_2024-Update
Glyma.14G129100 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
LOC_Os09g15430 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
Solyc01g091600 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G61180.1) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 335 376
No external refs found!