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  5. Seita.5G128200.1

Seita.5G128200.1


Description : component *(MSH7) of MSH2-x mismatch repair heterodimers


Gene families : OG_42_0001047 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G128200.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Kfl00153_0160 kfl00153_0160_v1.1 (at4g02070 : 834.0) encodes a DNA mismatch repair... 0.01 Orthogroups_2024-Update
Kfl00266_0120 kfl00266_0120_v1.1 (at3g24495 : 377.0) encodes a DNA mismatch repair... 0.02 Orthogroups_2024-Update
PSME_00009532-RA No alias (at3g24495 : 348.0) encodes a DNA mismatch repair... 0.02 Orthogroups_2024-Update
PSME_00032571-RA No alias (at3g24495 : 167.0) encodes a DNA mismatch repair... 0.01 Orthogroups_2024-Update
PSME_00043455-RA No alias (at3g24495 : 184.0) encodes a DNA mismatch repair... 0.01 Orthogroups_2024-Update
Solyc01g079520 No alias DNA mismatch repair protein (AHRD V3.3 *** Q6DQL6_PETHY) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006298 mismatch repair IEA 16Dec
MF GO:0030983 mismatched DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 678 893
IPR007860 DNA_mmatch_repair_MutS_con_dom 518 660
IPR007695 DNA_mismatch_repair_MutS-lik_N 393 503
IPR000432 DNA_mismatch_repair_MutS_C 955 1147
No external refs found!