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  5. Seita.5G148400.1

Seita.5G148400.1


Description : Unknown function


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G148400.1
Cluster HCAA Clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
At1g33390 No alias FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4] 0.03 Orthogroups_2024-Update
Brara.K01116.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
Mp4g04560.1 No alias ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.04 Orthogroups_2024-Update
Pp1s312_57V6 No alias deah-box rna helicase 0.03 Orthogroups_2024-Update
Sobic.009G254100.1 No alias RNA helicase *(Prp22) 0.03 Orthogroups_2024-Update
Solyc05g015040 No alias RNA helicase DEAH-box 15 0.03 Orthogroups_2024-Update
Solyc09g097820 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
evm.model.contig_2036.4 No alias (at5g13010 : 784.0) embryo defective 3011 (EMB3011);... 0.01 Orthogroups_2024-Update
evm.model.contig_524.2 No alias (at3g62310 : 724.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 462 534
IPR011709 DUF1605 609 688
IPR001650 Helicase_C 271 399
No external refs found!