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  5. Seita.5G156600.1

Seita.5G156600.1


Description : polygalacturonase *(PGX3-like) & EC_3.2 glycosylase


Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G156600.1
Cluster HCAA Clusters: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
At1g02460 No alias At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5] 0.04 Orthogroups_2024-Update
Glyma.03G222500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G219700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005811 lipid droplet IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 377 697
No external refs found!