At4g25730

Description : Putative rRNA methyltransferase [Source:UniProtKB/TrEMBL;Acc:F4JTD2]

Gene families : OG_42_0003815 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003815_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At4g25730
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g16130	No alias	FtsJ-like methyltransferase family protein	0.18	Orthogroups_2024-Update
Brara.K00179.1	No alias	MRM2-type rRNA methyltransferase	0.16	Orthogroups_2024-Update
Cre12.g529500	No alias	FtsJ-like methyltransferase family protein	0.15	Orthogroups_2024-Update
Glyma.11G116800	No alias	FtsJ-like methyltransferase family protein	0.08	Orthogroups_2024-Update
Kfl00895_0010	kfl00895_0010_v1.1	(at4g25730 : 357.0) FtsJ-like methyltransferase family...	0.05	Orthogroups_2024-Update
Potri.009G118400	No alias	FtsJ-like methyltransferase family protein	0.09	Orthogroups_2024-Update
Pp1s22_254V6	No alias	rrna methyltransferase	0.07	Orthogroups_2024-Update
Seita.3G143200.1	No alias	MRM2-type rRNA methyltransferase	0.12	Orthogroups_2024-Update
Sobic.009G235200.1	No alias	MRM2-type rRNA methyltransferase	0.11	Orthogroups_2024-Update
Solyc10g046930	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.08	Orthogroups_2024-Update
Solyc11g020810	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc11g020820	No alias	FtsJ-like methyltransferase family protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Sopen10g016730	No alias	FtsJ-like methyltransferase	0.08	Orthogroups_2024-Update
Sopen11g010770	No alias	FtsJ-like methyltransferase	0.07	Orthogroups_2024-Update
evm.model.contig_4562.1	No alias	(at4g25730 : 353.0) FtsJ-like methyltransferase family...	0.07	Orthogroups_2024-Update
evm.model.tig00000217.16	No alias	(at4g25730 : 263.0) FtsJ-like methyltransferase family...	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	IEA	InterProScan predictions
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR012920	rRNA_MeTfrase_Spb1_C	598	787
IPR002877	rRNA_MeTrfase_FtsJ_dom	22	200
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	235	383

External Links

No external refs found!

At4g25730

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation