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  5. Seita.5G189300.1

Seita.5G189300.1


Description : Unknown function


Gene families : OG_42_0000109 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G189300.1
Cluster HCAA Clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
At5g56870 No alias Beta-galactosidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV8] 0.03 Orthogroups_2024-Update
Bradi1g37450 No alias beta galactosidase 1 0.03 Orthogroups_2024-Update
Bradi2g40450 No alias beta-galactosidase 7 0.03 Orthogroups_2024-Update
Brara.C01218.1 No alias beta-galactosidase *(BGAL1) & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Glyma.15G169500 No alias beta-galactosidase 12 0.03 Orthogroups_2024-Update
Glyma.16G083700 No alias beta-galactosidase 7 0.02 Orthogroups_2024-Update
PSME_00001343-RA No alias (at2g28470 : 968.0) putative beta-galactosidase (BGAL8... 0.02 Orthogroups_2024-Update
PSME_00025599-RA No alias (at5g63810 : 95.1) member of Glycoside Hydrolase Family... 0.02 Orthogroups_2024-Update
PSME_00036669-RA No alias (at4g36360 : 122.0) putative beta-galactosidase (BGAL3... 0.02 Orthogroups_2024-Update
Potri.006G144500 No alias beta galactosidase 1 0.02 Orthogroups_2024-Update
Pp1s189_71V6 No alias beta-galactosidase expressed 0.03 Orthogroups_2024-Update
Sopen06g022060 No alias Glycosyl hydrolases family 35 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 85 159
No external refs found!