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  5. Seita.5G189700.1

Seita.5G189700.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G189700.1
Cluster HCAA Clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Bradi2g47337 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Bradi2g47410 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.04 Orthogroups_2024-Update
Glyma.13G119000 No alias P-glycoprotein 11 0.06 Orthogroups_2024-Update
LOC_Os01g18670 No alias MDR-like ABC transporter, putative, expressed 0.04 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
MA_18863g0010 No alias (at2g47000 : 769.0) Multidrug resistance P-glycoprotein... 0.05 Orthogroups_2024-Update
MA_6870g0010 No alias (q6yuu5|mdr_orysa : 1284.0) Putative multidrug... 0.02 Orthogroups_2024-Update
Mp2g02920.1 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.04 Orthogroups_2024-Update
PSME_00023264-RA No alias (q6yuu5|mdr_orysa : 1318.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00038380-RA No alias (q6yuu5|mdr_orysa : 1204.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00042040-RA No alias (at3g28345 : 1318.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
Potri.011G133800 No alias P-glycoprotein 18 0.02 Orthogroups_2024-Update
Pp1s28_282V6 No alias multidrug pheromone mdr abc transporter family 0.03 Orthogroups_2024-Update
Seita.5G283600.1 No alias subfamily ABCB transporter 0.06 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.02 Orthogroups_2024-Update
Solyc12g098840 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.03 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 780 1049
IPR011527 ABC1_TM_dom 116 388
IPR003439 ABC_transporter-like 456 604
IPR003439 ABC_transporter-like 1118 1267
No external refs found!