1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G194000.1

Seita.5G194000.1


Description : regulatory protein *(LOTR) involved in Casparian strip formation


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G194000.1
Cluster HCAA Clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
A4A49_35447 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At1g55360 No alias At1g55360 [Source:UniProtKB/TrEMBL;Acc:Q9C8A7] 0.02 Orthogroups_2024-Update
Brara.E00409.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E02767.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G151319 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
Glyma.19G249800 No alias Protein of Unknown Function (DUF239) 0.04 Orthogroups_2024-Update
Potri.006G233700 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Potri.015G080300 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
Seita.2G363400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G348700.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR004314 Neprosin 196 408
IPR025521 Neprosin_propep 61 172
No external refs found!