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  5. Seita.5G242100.1

Seita.5G242100.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G242100.1
Cluster HCAA Clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
123655 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
82255 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Orthogroups_2024-Update
At3g49170 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Orthogroups_2024-Update
Bradi1g12697 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g21907 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g15830 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G029859 No alias dynamin-like protein 6 0.03 Orthogroups_2024-Update
Glyma.07G033300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G073600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G090900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G102300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G001760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G019670.6 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU1Hr1G087370.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G056450.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G113840.2 No alias Unknown function 0.06 Orthogroups_2024-Update
LOC_Os02g26940 No alias vegetative storage protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g01850 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_11759g0010 No alias (at4g13650 : 566.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_20168g0010 No alias (at3g26782 : 533.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_27147g0010 No alias (at3g49170 : 606.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
MA_38266g0010 No alias (at3g12770 : 649.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_385322g0010 No alias (at1g08070 : 385.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_653417g0010 No alias (at4g13650 : 731.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_68084g0010 No alias (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
MA_94165g0010 No alias (at1g11290 : 612.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00006080-RA No alias (at4g13650 : 605.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00007181-RA No alias (at3g03580 : 567.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00009010-RA No alias (at4g13650 : 679.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00010401-RA No alias (at4g18750 : 645.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00011207-RA No alias (at3g63370 : 641.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00011574-RA No alias (at1g16480 : 646.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00015008-RA No alias (at4g33170 : 594.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
PSME_00030185-RA No alias (at3g57430 : 680.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00033049-RA No alias (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00042901-RA No alias (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00042924-RA No alias (at3g57430 : 662.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056779-RA No alias (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056826-RA No alias (at2g13600 : 495.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G244500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G263300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G163400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sobic.008G147400.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen10g006390 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 794 886
IPR002885 Pentatricopeptide_repeat 473 523
IPR002885 Pentatricopeptide_repeat 323 371
IPR002885 Pentatricopeptide_repeat 579 626
IPR002885 Pentatricopeptide_repeat 654 678
IPR002885 Pentatricopeptide_repeat 186 215
IPR002885 Pentatricopeptide_repeat 117 144
IPR002885 Pentatricopeptide_repeat 219 244
IPR002885 Pentatricopeptide_repeat 445 470
No external refs found!