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  5. Seita.5G266000.1

Seita.5G266000.1


Description : C2H2 subclass Di19 transcription factor


Gene families : OG_42_0000601 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000601_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G266000.1
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Brara.F02828.1 No alias C2H2 subclass Di19 transcription factor 0.04 Orthogroups_2024-Update
HORVU1Hr1G087100.4 No alias C2H2 subclass Di19 transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G061690.1 No alias C2H2 subclass Di19 transcription factor 0.05 Orthogroups_2024-Update
Sobic.008G125900.1 No alias C2H2 subclass Di19 transcription factor 0.04 Orthogroups_2024-Update
Sobic.009G108600.3 No alias C2H2 subclass Di19 transcription factor 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR027935 Di19_C 132 242
IPR008598 Di19_Zn_binding_dom 60 112
No external refs found!