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  5. Seita.5G272200.1

Seita.5G272200.1


Description : Unknown function


Gene families : OG_42_0005749 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005749_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G272200.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Bradi2g46660 No alias Ubiquitin-like superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G076827 No alias Ubiquitin-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G062980.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g48930 No alias splicing factor-related, putative, expressed 0.03 Orthogroups_2024-Update
Sobic.003G258400.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Solyc01g095790 No alias Splicing factor 3a, subunit 3 (AHRD V3.3 *-* A0A0K9P946_ZOSMR) 0.03 Orthogroups_2024-Update
Sopen01g039540 No alias Telomere stability and silencing 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR024974 Sde2_N 7 184
No external refs found!